NEWS

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PatientProfiles 1.6.1 (2026-08-21)

• Fix na_matches = "na" performance by @catalamarti

PatientProfiles 1.6.0 (2026-07-25)

• Add a type argument to choose the storage type of generated flag, count, days, age, observation, and intersect field columns by @catalamarti in #877
• Allow indexDate to be an actual date by @catalamarti in #871
• Add Events functions by @catalamarti in #873
• Add ageUnit for addBirthday by @catalamarti in #868
• Add NA documentation for intersections by @catalamarti in #851
• Use explicit as.character() in str_flattern() for addIntersectField functions (allowDuplicates = TRUE) by @catalamarti in #863
• Correct censor date missclassification by @catalamarti in #860
• Document allowDuplicates = FALSE by @catalamarti in #864
• Make sure concept is also selectionable by @catalamarti in #865
• Allow multiple table arguments by @catalamarti in #866
• Fix inconsistent NA matching for empty tables by @catalamarti in #869
• Fix Sql server empty tables edge case by @catalamarti in #870
• Consistent documentation by @catalamarti in #872
• Use date_build to build dates by @catalamarti in #867
• Allow to provide custom estimates to summarisedResult by @catalamarti in #874

PatientProfiles 1.5.0 (2026-02-24)

• Fix tests for dplyr 1.2.0 by @catalamarti in #842
• add ageUnit to age functions by @catalamarti in #840
• addCohortIntersectField by @catalamarti in #843
• addBirthDay function by @catalamarti in #841

PatientProfiles 1.4.5 (2026-01-21)

• Add new estimates count_0, count_negative, count_positive, count_not_positive, count_not_negative + percentages by @catalamarti in #825
• Restrict count and percentage to binary variables by @catalamarti in #836
• Limit x values of density estimation to .005 and .995 percentiles of the distribution by @ablack3 in #820
• Improve summariseResult examples by @catalamarti in #827
• Add message when no result is provided in summariseResult by @catalamarti in #826
• Add new estimates count_person and count_subject by @catalamarti in #828
• Fix warning when table is no cdm_table in summariseResult by @catalamarti in #835
• Standard deviation is corrected to numeric for all variables by @catalamarti in #834

PatientProfiles 1.4.4 (2025-10-29)

• fix edge case for not present domains by @catalamarti in #815
• additional compute in intersect by @edward-burn in #817

PatientProfiles 1.4.3 (2025-10-01)

• validate concept set names to be appropiate by @catalamarti in #806
• explicit message for order by @catalamarti in #807
• allowDuplicated documentation by @catalamarti in #805
• Support local datasets by @catalamarti in #810
• Deprecate mockDisconnect by @catalamarti in #811

PatientProfiles 1.4.2 (2025-07-09)

• Allow NA values with density estimate by @catalamarti in #795

PatientProfiles 1.4.1 (2025-06-27)

• Fix pass type in expression by @edward-burn in #794

PatientProfiles 1.4.0 (2025-05-30)

• Fix readme lifecycle badge by @catalamarti in #778
• create new function addConceptName by @catalamarti in #783
• Support visit domain and drop non supported concepts in addConceptIntersect by @catalamarti in #784
• Collect in SummariseResult if median is asked in a sql server by @catalamarti in #789
• arrange strata in summariseResult by @catalamarti in #790
• Improve performance of .addIntersect by @catalamarti in #788

PatientProfiles 1.3.1 (2025-03-05)

• Validate cohort using class by @catalamarti in #773
• Use case_when in addCategories by @catalamarti in #774
• Fix binary counts in db by @catalamarti in #775

PatientProfiles 1.3.0 (2025-02-26)

• Changed addCategories by @KimLopezGuell in #734
• conceptSet allows conceptSetExpression by @catalamarti in #743
• account for integer64 counts by @catalamarti in #745
• add inObservation argument in addTable... by @catalamarti in #749
• addConceptIntersectField by @catalamarti in #747
• validate targetCohortId with og by @catalamarti in #750
• create filterInObservation by @catalamarti in #744
• create filterCohortId by @catalamarti in #748
• add benchmarkPatientProfiles by @catalamarti in #752
• Update addIntersect.R by @catalamarti in #758
• Reduce addDemographics computing time by @catalamarti in #759
• Reduce addIntersect computing time by @catalamarti in #761 #762 #764 #763
• preserve field type and add allowDuplicates arg by @catalamarti in #765
• Add weights argument to summariseResult by @nmercadeb in #733
• Increase test coverage by @catalamarti in #768

PatientProfiles 1.2.3 (2024-12-12)

• Bug fix to correct NA columns when not in observation by @catalamarti

PatientProfiles 1.2.2 (2024-11-28)

• Update links and codecoverage by @catalamarti
• Distinct individuals in addObservationPeriodId() by @martaalcalde
• Remove dependencies on visOmopResults and magrittr @catalamarti

PatientProfiles 1.2.1 (2024-10-25)

• edge case where no concept in concept table by @edward-burn
• update assertions in addDeath functions by @catalamarti
• increase test coverage by @catalamarti
• add internal compute to addInObservation by @edward-burn
• conceptIntersect inObservation argument by @edward-burn

PatientProfiles 1.2.0 (2024-09-11)

• addObservationPeriodId() is a new function that adds the number of observation period that an observation is in.

• Add density estimate to summariseResult()

PatientProfiles 1.1.1 (2024-07-28)

• addCohortName overwrites if there already exists a cohort_name column #680 and #682.

• Correct nan and Inf for missing values #674

• Fix #670 #671

PatientProfiles 1.1.0 (2024-06-11)

• addConceptIntersect now includes records with missing end date under the assumption that end date is equal to start date.

• add* functions have a new argument called name to decide if we want a resultant temp table (name = NULL) or have a permanent table with a certain name. Additional functions are provided, e.g. addDemographicsQuery, where the result is not computed.

PatientProfiles 1.0.0 (2024-05-16)

• Stable release of package