Package: CohortSurvival 1.2.0

Edward Burn

CohortSurvival: Estimate Survival from Common Data Model Cohorts

Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.

Authors:Kim López-Güell [aut], Edward Burn [aut, cre], Martí Català [aut], Xintong Li [aut], Danielle Newby [aut], Nuria Mercade-Besora [aut]

CohortSurvival_1.2.0.tar.gz
CohortSurvival_1.2.0.zip(r-4.7-any)CohortSurvival_1.2.0.zip(r-4.6-any)CohortSurvival_1.2.0.zip(r-4.5-any)
CohortSurvival_1.2.0.tgz(r-4.6-any)CohortSurvival_1.2.0.tgz(r-4.5-any)
CohortSurvival_1.2.0.tar.gz(r-4.7-any)CohortSurvival_1.2.0.tar.gz(r-4.6-any)
CohortSurvival_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CohortSurvival/json (API)

# Install 'CohortSurvival' in R:
install.packages('CohortSurvival', repos = c('https://darwin-eu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/darwin-eu/cohortsurvival/issues

Pkgdown/docs site:https://darwin-eu.github.io

On CRAN:

Conda:

6.97 score 5 stars 93 scripts 1.0k downloads 21 exports 33 dependencies

Last updated from:bc37f5e70b. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK206
source / vignettesOK365
linux-releaseOK247
macos-releaseOK288
macos-oldrelOK275
windows-develOK149
windows-releaseOK166
windows-oldrelOK190
wasm-releaseOK132

Exports:addCohortSurvivalasSurvivalResultattritionavailableSurvivalGroupingbindcohortCodelistcohortCountestimateCompetingRiskSurvivalestimateSingleEventSurvivalexportSummarisedResultfilterSurvivalChangesimportSummarisedResultmockMGUS2cdmoptionsTableSurvivalplotSurvivalriskTablesettingssuppresstableSurvivaltableSurvivalAttritiontableSurvivalEvents

Dependencies:backportsblobbroomcliclockcpp11DBIdbplyrdplyrgenericsgluelatticelifecyclemagrittrMatrixomopgenericsPatientProfilespillarpkgconfigpurrrR6rlangsnakecasestringistringrsurvivaltibbletidyrtidyselecttzdbutf8vctrswithr

Competing risk survival
Set up | Estimating survival with competing risk | Same-day event hierarchy | With stratification | Disconnect from the cdm database connection
Rendered froma02_Competing_risk_survival.Rmdusingknitr::rmarkdown

Last update: 2026-10-07
Started: 2023-11-13

Single outcome event of interest
Set up | Overall survival | Survival format | Changing estimation parameters | With stratification | Multiple target or outcome cohorts | Checking the assumption of proportionality between outcomes | Export and import a survival output | Disconnect from the cdm database connection
Rendered froma01_Single_event_of_interest.Rmdusingknitr::rmarkdown

Last update: 2026-10-07
Started: 2023-09-14

Creating cohorts for survival analyses
Set up | Cohorts needed for survival | Target cohort design | Outcome cohort design | Competing outcome design | Adding strata | Multiple cohorts in one table | Pre-analysis checklist | Disconnect from the cdm database connection
Rendered froma00_Creating_cohorts_for_survival.Rmdusingknitr::rmarkdown

Last update: 2026-07-03
Started: 2026-07-03

Further survival analyses
Set up | Further analysis with single event survival | Further analysis with competing risk survival | Disconnect from the cdm database connection
Rendered froma03_Further_survival_analyses.Rmdusingknitr::rmarkdown

Last update: 2026-07-03
Started: 2024-05-07