CDMConnector - Connect to an OMOP Common Data Model

Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.

Last updated 9 days ago

11.12 score 12 stars 11 packages 310 scripts 1.4k downloads

CodelistGenerator - Identify Relevant Clinical Codes and Evaluate Their Use

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

Last updated 11 days ago

9.56 score 12 stars 3 packages 108 scripts 1.2k downloads

visOmopResults - Graphs and Tables for OMOP Results

Provides methods to transform omop_result objects into formatted tables and figures, facilitating the visualization of study results working with the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Last updated 13 days ago

8.45 score 1 stars 11 packages 37 scripts 1000 downloads

IncidencePrevalence - Estimate Incidence and Prevalence using the OMOP Common Data Model

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Last updated 21 days ago

7.31 score 9 stars 75 scripts 967 downloads

DrugExposureDiagnostics - Diagnostics for OMOP Common Data Model Drug Records

Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.

Last updated 4 days ago

7.03 score 4 stars 41 scripts 418 downloads

TreatmentPatterns - Analyzes Real-World Treatment Patterns of a Study Population of Interest

Computes treatment patterns within a given cohort using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM). As described in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.

Last updated 22 days ago

6.73 score 2 stars 61 scripts 269 downloads

TestGenerator - Integration Unit Tests for Pharmacoepidemiological Studies

Push a sample population for unit testing on data mapped to the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Last updated 14 days ago

4.00 score 2 scripts 161 downloads