CDMConnector - Connect to an OMOP Common Data Model

Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.

Last updated 23 days ago

11.39 score 12 stars 12 dependents 502 scripts 1.7k downloads

omopgenerics - Methods and Classes for the OMOP Common Data Model

Provides definitions of core classes and methods used by analytic pipelines that query the OMOP (Observational Medical Outcomes Partnership) common data model.

Last updated 14 days ago

9.97 score 16 dependents 193 scripts 2.2k downloads

PatientProfiles - Identify Characteristics of Patients in the OMOP Common Data Model

Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.

Last updated 14 days ago

9.97 score 1 stars 9 dependents 225 scripts 2.5k downloads

CodelistGenerator - Identify Relevant Clinical Codes and Evaluate Their Use

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

Last updated 30 days ago

9.94 score 14 stars 4 dependents 165 scripts 1.9k downloads

DrugUtilisation - Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model

Summarise patient-level drug utilisation cohorts using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. New users and prevalent users cohorts can be generated and their characteristics, indication and drug use summarised.

Last updated 2 months ago

8.20 score 2 dependents 156 scripts 703 downloads

CohortCharacteristics - Summarise and Visualise Characteristics of Patients in the OMOP CDM

Summarise and visualise the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model (CDM).

Last updated 4 months ago

8.10 score 1 stars 1 dependents 111 scripts 687 downloads

IncidencePrevalence - Estimate Incidence and Prevalence using the OMOP Common Data Model

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Last updated 11 days ago

7.96 score 9 stars 1 dependents 102 scripts 1.1k downloads

visOmopResults - Graphs and Tables for OMOP Results

Provides methods to transform omop_result objects into formatted tables and figures, facilitating the visualisation of study results working with the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Last updated 22 days ago

7.73 score 4 dependents 53 scripts 1.1k downloads

DrugExposureDiagnostics - Diagnostics for OMOP Common Data Model Drug Records

Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.

Last updated 8 days ago

7.11 score 4 stars 41 scripts 689 downloads

TreatmentPatterns - Analyzes Real-World Treatment Patterns of a Study Population of Interest

Computes treatment patterns within a given cohort using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM). As described in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.

Last updated 10 days ago

6.62 score 2 stars 65 scripts 586 downloads

TestGenerator - Integration Unit Tests for Pharmacoepidemiological Studies

Push a sample population for unit testing on data mapped to the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Last updated 4 months ago

3.70 score 2 scripts 501 downloads