CDMConnector - Connect to an OMOP Common Data Model
Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.
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11.74 score 15 stars 10 dependents 600 scripts 2.2k downloads
CodelistGenerator - Identify Relevant Clinical Codes and Evaluate Their Use
Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.
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10.24 score 18 stars 8 dependents 378 scripts 1.1k downloadsomopgenerics - Methods and Classes for the OMOP Common Data Model
Provides definitions of core classes and methods used by analytic pipelines that query the OMOP (Observational Medical Outcomes Partnership) common data model.
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9.72 score 22 dependents 423 scripts 1.6k downloads
PatientProfiles - Identify Characteristics of Patients in the OMOP Common Data Model
Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.
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9.61 score 2 stars 13 dependents 378 scripts 1.1k downloads
CohortCharacteristics - Summarise and Visualise Characteristics of Patients in the OMOP CDM
Summarise and visualise the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model (CDM).
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8.56 score 3 stars 2 dependents 194 scripts 1.2k downloads
DrugUtilisation - Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model
Summarise patient-level drug utilisation cohorts using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. New users and prevalent users cohorts can be generated and their characteristics, indication and drug use summarised.
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8.08 score 3 dependents 224 scripts 784 downloads
visOmopResults - Graphs and Tables for OMOP Results
Provides methods to transform omop_result objects into formatted tables and figures, facilitating the visualisation of study results working with the Observational Medical Outcomes Partnership (OMOP) Common Data Model.
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7.43 score 1 dependents 112 scripts 803 downloadsTreatmentPatterns - Analyzes Real-World Treatment Patterns of a Study Population of Interest
Computes treatment patterns within a given cohort using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM). As described in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.
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7.34 score 2 stars 129 scripts 499 downloads
IncidencePrevalence - Estimate Incidence and Prevalence using the OMOP Common Data Model
Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.
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7.32 score 12 stars 1 dependents 164 scripts 976 downloadsDrugExposureDiagnostics - Diagnostics for OMOP Common Data Model Drug Records
Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
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6.70 score 4 stars 42 scripts 602 downloads
TestGenerator - Integration Unit Tests for Pharmacoepidemiological Studies
An R interface to load testing data in the 'OMOP' Common Data Model ('CDM'). An input file, csv or xlsx, can be converted to a 'CDMConnector' object. This object can be used to execute and test studies that use the 'CDM' <https://www.ohdsi.org/data-standardization/>.
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5.26 score 10 scripts 656 downloads