Package: IncidencePrevalence 0.8.1

Edward Burn

IncidencePrevalence: Estimate Incidence and Prevalence using the OMOP Common Data Model

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Authors:Edward Burn [aut, cre], Berta Raventos [aut], Marti Catala [aut], Mike Du [ctb], Yuchen Guo [ctb], Adam Black [ctb], Ger Inberg [ctb], Kim Lopez [ctb]

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IncidencePrevalence.pdf |IncidencePrevalence.html✨
IncidencePrevalence/json (API)

# Install 'IncidencePrevalence' in R:
install.packages('IncidencePrevalence', repos = c('https://darwin-eu.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/darwin-eu/incidenceprevalence/issues

On CRAN:

7.31 score 9 stars 75 scripts 967 downloads 24 exports 49 dependencies

Last updated 5 days agofrom:7788148da5. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 01 2024
R-4.5-winOKNov 01 2024
R-4.5-linuxOKNov 01 2024
R-4.4-winOKNov 01 2024
R-4.4-macOKNov 01 2024
R-4.3-winOKNov 01 2024
R-4.3-macOKNov 01 2024

Exports:%>%attritionbenchmarkIncidencePrevalencebindcohortCodelistcohortCountestimateIncidenceestimatePeriodPrevalenceestimatePointPrevalenceexportSummarisedResultgenerateDenominatorCohortSetgenerateTargetDenominatorCohortSetimportSummarisedResultmockIncidencePrevalenceRefoptionsTableIncidenceoptionsTablePrevalenceplotIncidenceplotPrevalencesettingssuppresstableIncidencetableIncidenceAttritiontablePrevalencetablePrevalenceAttrition

Dependencies:backportsbitbit64blobCDMConnectorcheckmateclicliprclockcpp11crayonDBIdbplyrdiffobjdplyrfansifsgenericsgluehmsjsonlitelifecyclelubridatemagrittromopgenericsPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6readrrematch2rlangsnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvisOmopResultsvroomwaldowithr

Introduction to IncidencePrevalence

Rendered froma01_Introduction_to_IncidencePrevalence.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-07-02
Started: 2023-01-27

Creating denominator cohorts

Rendered froma02_Creating_denominator_populations.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-10-14
Started: 2023-01-27

Creating target denominator populations

Rendered froma03_Creating_target_denominator_populations.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-07-02
Started: 2023-12-11

Calculating prevalence

Rendered froma04_Calculating_prevalence.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-10-14
Started: 2023-01-27

Calculating incidence

Rendered froma05_Calculating_incidence.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-10-14
Started: 2023-01-27

Plotting options

Rendered froma06_Plotting_options.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-07-02
Started: 2024-04-10