Package: TestGenerator 0.8.0

Cesar Barboza

TestGenerator: Integration Unit Tests for Pharmacoepidemiological Studies

An R interface to load testing data in the 'OMOP' Common Data Model ('CDM'). An input file, csv or xlsx, can be converted to a 'CDMConnector' object. This object can be used to execute and test studies that use the 'CDM' <https://www.ohdsi.org/data-standardization/>.

Authors:Cesar Barboza [aut, cre], Ioanna Nika [aut], Ger Inberg [aut], Adam Black [aut]

TestGenerator_0.8.0.tar.gz
TestGenerator_0.8.0.zip(r-4.7)TestGenerator_0.8.0.zip(r-4.6)TestGenerator_0.8.0.zip(r-4.5)
TestGenerator_0.8.0.tgz(r-4.6-any)TestGenerator_0.8.0.tgz(r-4.5-any)
TestGenerator_0.8.0.tar.gz(r-4.7-any)TestGenerator_0.8.0.tar.gz(r-4.6-any)
TestGenerator_0.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TestGenerator/json (API)

# Install 'TestGenerator' in R:

install.packages('TestGenerator', repos = c('https://darwin-eu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/darwin-eu/testgenerator/issues

Pkgdown/docs site:https://darwin-eu.github.io

On CRAN:

5.22 score 11 scripts 632 downloads 9 exports 78 dependencies

Last updated from:8f67c14384. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	256
source / vignettes	OK	224
linux-release-x86_64	OK	264
macos-release-arm64	OK	216
macos-oldrel-arm64	OK	198
windows-devel	OK	3103
windows-release	OK	2953
windows-oldrel	OK	3017
wasm-release	OK	130

Exports:cleanupTestCdm downloadTestData generateTestTables graphCohort patientsCDM readPatients readPatients.csv readPatients.xl useGithubAction

Dependencies:askpass backports bit bit64 blob brio callr CDMConnector cellranger checkmate cli clipr cpp11 crayon credentials curl DBI dbplyr desc diffobj dplyr duckdb evaluate fs generics gert gitcreds glue hms httr2 ini jsonlite lifecycle lubridate magrittr omopgenerics openssl openxlsx otel pillar pkgbuild pkgconfig pkgload praise prettyunits processx progress ps purrr R6 rappdirs Rcpp readr readxl rematch rlang RPostgres rprojroot rstudioapi snakecase stringi stringr sys testthat tibble tidyr tidyselect timechange tzdb usethis utf8 vctrs vroom waldo whisker withr yaml zip

Getting started with TestGenerator

Rendered fromgettingStarted.Rmdusingknitr::rmarkdown

Last update: 2026-05-17
Started: 2026-04-30

GitHub Actions

Create the workflow files | Add the expected test files | PostgreSQL and SQL Server actions | Databricks action | Suggested CI workflow

Rendered fromgithubActions.Rmdusingknitr::rmarkdown

Last update: 2026-05-17
Started: 2026-05-17

Remote databases

Use patientsCDM() with a remote database | Environment variables for direct use | A minimal backend test pattern

Rendered fromremoteDatabases.Rmdusingknitr::rmarkdown

Last update: 2026-05-17
Started: 2026-05-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check if a given remote file is available for download	checkRemoteFileAvailable
Check if the given tables and columns are valid and return the loaded data.	checkTablesColumns
Clean up a test CDM on a remote database	cleanupTestCdm
Download Test Data Files	downloadTestData
Generates an Excel file with sheets that correspond to an OMOP-CDM tables.	generateTestTables
Deprecated cohort timeline visualisation	graphCohort
Pushes test population into a blank CDM.	patientsCDM
Converts a sample of patients into Unit Testing Definition JSON file.	readPatients
Converts a sample of patients in CSV format into a Unit Testing Definition JSON file.	readPatients.csv
Converts a sample of patients in XLSX format into Unit Testing Definition JSON file.	readPatients.xl
Create GitHub Action workflows for specific DBMS	useGithubAction