Package: visOmopResults 0.4.00001

Núria Mercadé-Besora

visOmopResults: Graphs and Tables for OMOP Results

Provides methods to transform omop_result objects into formatted tables and figures, facilitating the visualization of study results working with the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Authors:Martí Català [aut], Núria Mercadé-Besora [aut, cre], Yuchen Guo [aut]

visOmopResults_0.4.00001.tar.gz
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visOmopResults.pdf |visOmopResults.html✨
visOmopResults/json (API)

# Install 'visOmopResults' in R:
install.packages('visOmopResults', repos = c('https://darwin-eu.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/darwin-eu/visomopresults/issues

On CRAN:

8.34 score 1 stars 11 packages 37 scripts 1.1k downloads 42 exports 26 dependencies

Last updated 1 months agofrom:ac8313eabe. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-winOKOct 26 2024
R-4.5-linuxOKOct 26 2024
R-4.4-winOKOct 26 2024
R-4.4-macOKOct 26 2024
R-4.3-winOKOct 26 2024
R-4.3-macOKOct 26 2024

Exports:additionalColumnsaddSettingsbarPlotbindboxPlotexportSummarisedResultfilterAdditionalfilterGroupfilterSettingsfilterStrataformatEstimateNameformatEstimateValueformatHeaderformatTablefxTablegroupColumnsgtTableimportSummarisedResultmockSummarisedResultoptionsVisOmopTablepivotEstimatesscatterPlotsettingssettingsColumnssplitAdditionalsplitAllsplitGroupsplitNameLevelsplitStratastrataColumnssuppresstableOptionstableStyletableTypetidytidyColumnsuniteAdditionaluniteGroupuniteNameLeveluniteStratavisOmopTablevisTable

Dependencies:blobclicpp11DBIdbplyrdplyrfansigenericsgluelifecyclemagrittromopgenericspillarpkgconfigpurrrR6rlangsnakecasestringistringrtibbletidyrtidyselectutf8vctrswithr

Formatting tables

Rendered fromtables.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-09-23
Started: 2024-09-22

Plotting tools

Rendered fromplots.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-09-22
Started: 2024-09-16

Tidy your summarised result object

Rendered fromtidySummarisedResult.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-09-23
Started: 2024-09-22

Filter helpers

Rendered fromfilterSummarisedResult.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-09-23
Started: 2024-09-22

Utility functions

Rendered fromutilityFunctions.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-09-23
Started: 2024-09-20

Readme and manuals

Help Manual

Help pageTopics
Identify variables in additional_name columnadditionalColumns
Add settings columns to a <summarised_result> objectaddSettings
Create a bar plot visualisation from a <summarised_result> objectbarPlot
Create a box plot visualisation from a <summarised_result> objectboxPlot
Filter the additional_name-additional_level pair in a summarised_resultfilterAdditional
Filter the group_name-group_level pair in a summarised_resultfilterGroup
Filter a <summarised_result> using the settingsfilterSettings
Filter the strata_name-strata_level pair in a summarised_resultfilterStrata
Formats estimate_name and estimate_value columnformatEstimateName
Formats the estimate_value columnformatEstimateValue
Create a header for gt and flextable objectsformatHeader
Creates a flextable or gt object from a dataframeformatTable
Creates a flextable object from a dataframefxTable
Identify variables in group_name columngroupColumns
Creates a gt object from a dataframegtTable
A <summarised_result> object filled with mock datamockSummarisedResult
Additional table formatting optionsoptionsVisOmopTable
Set estimates as columnspivotEstimates
Create a scatter plot visualisation from a <summarised_result> objectscatterPlot
Identify settings columns of a <summarised_result>settingsColumns
Split additional_name and additional_level columnssplitAdditional
Split all pairs name-level into columns.splitAll
Split group_name and group_level columnssplitGroup
Split name and level columns into the columnssplitNameLevel
Split strata_name and strata_level columnssplitStrata
Identify variables in strata_name columnstrataColumns
Additional table formatting options for 'visOmopTable()' and 'visTable()'tableOptions
Supported predefined styles for formatted tablestableStyle
Supported table classestableType
Turn a <summarised_result> object into a tidy tibbletidy.summarised_result
Identify tidy columns of a <summarised_result>tidyColumns
Unite one or more columns in additional_name-additional_level formatuniteAdditional
Unite one or more columns in group_name-group_level formatuniteGroup
Unite one or more columns in name-level formatuniteNameLevel
Unite one or more columns in strata_name-strata_level formatuniteStrata
Format a <summarised_result> object into a gt, flextable, or tibble objectvisOmopTable
Generate a formatted table from a <data.table>visTable